Tree

class magna.gtdb.tree.GtdbTree(source, path, md5)

The base class that all GTDB tree objects inherit.

md5: str

The expected MD5 checksum of the file.

path: str

The path to the downloaded file.

source: str

The source URL.

tree: dendropy.datamodel.treemodel.Tree

The dendropy tree.

Release 95

class magna.gtdb.tree.GtdbTreeR95Arc

Bases: GtdbTree

The GTDB archaeal tree (release 95).

class magna.gtdb.tree.GtdbTreeR95Bac

Bases: GtdbTree

The GTDB bacterial tree (release 95).

Release 202

class magna.gtdb.tree.GtdbTreeR202Arc

Bases: GtdbTree

The GTDB archaeal tree (release 202).

class magna.gtdb.tree.GtdbTreeR202Bac

Bases: GtdbTree

The GTDB bacterial tree (release 202).