CLI

magna

magna [OPTIONS] COMMAND [ARGS]...

Options

--install-completion

Install completion for the current shell.

--show-completion

Show completion for the current shell, to copy it or customize the installation.

ncbi

magna ncbi [OPTIONS] COMMAND [ARGS]...

download

magna ncbi download [OPTIONS] GID TARGET

Options

--file <file>

Default

NcbiAssemblyFileType.fna

Options

fna

Arguments

GID

Required argument

TARGET

Required argument

rq

magna rq [OPTIONS] COMMAND [ARGS]...

conda

magna rq conda [OPTIONS] QUEUE ENV CMD

Arguments

QUEUE

Required argument

ENV

Required argument

CMD

Required argument

delete

magna rq delete [OPTIONS] QUEUE

Arguments

QUEUE

Required argument

worker

magna rq worker [OPTIONS]