Metadata

class magna.gtdb.metadata.GtdbMetadata(source, path, md5)

df: pandas.core.frame.DataFrame

The metadata as a pandas DataFrame.

md5: str

The MD5 checksum of the downloaded file.

path: str

The path to the metadata file.

source: str

The source URL

Release 95

class magna.gtdb.metadata.GtdbMetadataR95

The combined archaeal and bacterial metadata (release 95).

df: pandas.core.frame.DataFrame

The combined dataframe.

class magna.gtdb.metadata.GtdbMetadataR95Arc

Bases: GtdbMetadata

The archaeal metadata (release 95).

class magna.gtdb.metadata.GtdbMetadataR95Bac

Bases: GtdbMetadata

The bacterial metadata (release 95).

Release 202

class magna.gtdb.metadata.GtdbMetadataR202

The combined archaeal and bacterial metadata (release 202).

df: pandas.core.frame.DataFrame

The combined dataframe.

class magna.gtdb.metadata.GtdbMetadataR202Arc

Bases: GtdbMetadata

The archaeal metadata (release 202).

class magna.gtdb.metadata.GtdbMetadataR202Bac

Bases: GtdbMetadata

The bacterial metadata (release 202).